Course: Chemistry 2

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Course title Chemistry 2
Course code SKS/CHE2
Organizational form of instruction Lecture + Lesson
Level of course Bachelor
Year of study not specified
Semester Summer
Number of ECTS credits 5
Language of instruction Czech
Status of course Compulsory
Form of instruction Face-to-face
Work placements This is not an internship
Recommended optional programme components None
Lecturer(s)
  • Štys Dalibor, prof. RNDr. CSc.
  • Štysová Rychtáriková Renata, Ing. Ph.D.
Course content
Structure, Formulas and Nomenclature of Organic Compounds: Graphic Representations and Nomenclature (trivial and IUPAC). Hydrocarbons: alkanes, alkenes, alkynes, aromatics. Nomenclature, phys-chem. properties and chemical reactions, hydrocarbons as natural substances, Functional groups: Halogenated compounds. Oxygen, nitrogen and sulfur derivatives, organometallic compounds, phys-chem. properties, reaction of individual functional groups, production and significance of derivatives, their occurrence and importance in nature: Carbohydrates: Structure and properties of monosaccharides; Disaccharides; polysaccharides, carbohydrate derivatives. Lipids: Structure and properties. Esters and other lipids, phospholipids, sphingolipids, biomembranes. Steroids: Structure of Steroids; Sterols; Bile acids; Steroid hormones; Cardiotonic steroids; Amino acids, biologically important amines. Peptides. Proteins. Nucleotides and nucleosides, RNA and DNA. UV-VIS spectroscopy, IR and Raman spectroscopy, MS spectrometry, NMR spectroscopy Main database of organic compounds, main software for working with formulas and structures, database of metabolic pathways. After passing of the practicals, the relationship between the spectrum, structure and interactions of substances is understood

Learning activities and teaching methods
Monologic (reading, lecture, briefing), Dialogic (discussion, interview, brainstorming), Laboratory
  • Semestral paper - 40 hours per semester
  • Class attendance - 98 hours per semester
  • Preparation for classes - 10 hours per semester
Learning outcomes
The aim of lectures in Chemistry II is to provide students with an overview of the following topics: 1) Nomenclature of organic compounds, structure of organic compounds and their principles, main chemical reactions of individual groups of substances, 2) Software for drawing, displaying and optimizing of chemical structures, databases of organic compounds, databases of metabolic pathways, basics of work with profesional literature 3) Main types of spectroscopy in organic chemistry and the relationship between structure and spectrum. In the framework of practical exercises: a) Students who have not completed extensive laboratory work in the previous study will acquire the principles of working with laboratory techniques in a chemical laboratory, b) all students undergo exercises to illustrate the relationship between the structure of the molecule, its interactions and the degree of ionization and the spectrum in the UV and visible areas
Graduates will achieve basic knowledge in the subject of physico-chemical properties of organic compounds, they will be familiar with systematical and trivial nomenclature and due to practical excercises in laboratory the absolvents will gain elementary skills in the field of laboratory research. Absolvents will get on necessary theoretical and practical background for the follow-up chemistry-based courses in Hydrochemistry and Biochemistry.
Prerequisites
This course is continuation of general and inorganic chemistry course ( Chemistry I), thus the pre-requisite is to pass the course Chemistry I.
VURH/CHE1
----- or -----
VURH/CHE1K

Assessment methods and criteria
Written examination, Student performance assessment

Participation on lectures is optional Exercise part 1 - basics of organic chemistry, participation is compulsory until passing the credit test. Exercise part 2 - presentation of colloquial work, attendance compulsory, apologies are accepted from students in practice, students with confirmation from a doctor or having other serious reasons for non-attendance accepted by the teacher To pass the course successfully, the student must: 1) Participate in excercises 2) Write a credit test to get a credit. To get the credit, 95% of the questions need to be answered correctly. 3) Present a seminar lecture with content determined by the teacher 4) Participate in laboratory practice 5) Submit and get approval of the laboratory practice protocol. 3) Pass the examination of organic molecules spectra analysis. Only students who pass the credit test and give a seminar lecture will be admitted. Exam and credit will be enrolled for students after successful approval of the laboratory practice protocol.
Recommended literature
  • NIST webook chemistry. 2018.
  • John Mc Murry. Organická chemie. Praha, VŠCHT, 2007.
  • Petr Šimůnek. Organická chemie 1 (pro posluchače kombinovaného studia oboru Speciální chemickobiologické obory). Pardubice.
  • University of Liverpool. ChemTube 3D. Liverpool, 2018.


Study plans that include the course
Faculty Study plan (Version) Category of Branch/Specialization Recommended year of study Recommended semester
Faculty: Faculty of Fisheries and Protection of Waters Study plan (Version): Fishery (2021) Category: Agriculture and forestry 1 Recommended year of study:1, Recommended semester: Summer
Faculty: Faculty of Fisheries and Protection of Waters Study plan (Version): Fishery (2020) Category: Agriculture and forestry 1 Recommended year of study:1, Recommended semester: Summer
Faculty: Faculty of Fisheries and Protection of Waters Study plan (Version): Protection of Waters (2018) Category: Ecology and environmental protection 1 Recommended year of study:1, Recommended semester: Summer
Faculty: Faculty of Fisheries and Protection of Waters Study plan (Version): Fishery (2019) Category: Agriculture and forestry 1 Recommended year of study:1, Recommended semester: Summer
Faculty: Faculty of Fisheries and Protection of Waters Study plan (Version): Protection of Waters (2019) Category: Ecology and environmental protection 1 Recommended year of study:1, Recommended semester: Summer
Faculty: Faculty of Fisheries and Protection of Waters Study plan (Version): Protection of Waters (2020) Category: Ecology and environmental protection 1 Recommended year of study:1, Recommended semester: Summer
Faculty: Faculty of Fisheries and Protection of Waters Study plan (Version): Protection of Waters (2021) Category: Ecology and environmental protection 1 Recommended year of study:1, Recommended semester: Summer
Faculty: Faculty of Fisheries and Protection of Waters Study plan (Version): Fishery (2018) Category: Agriculture and forestry 1 Recommended year of study:1, Recommended semester: Summer